J3_9PBE_035

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|C|1218
9PBE|1|S2|C|1219
9PBE|1|S2|A|1220
9PBE|1|S2|G|1221
*
9PBE|1|S2|C|1645
9PBE|1|S2|C|1646
9PBE|1|S2|A|1647
9PBE|1|S2|G|1648
9PBE|1|S2|U|1649
9PBE|1|S2|A|1650
9PBE|1|S2|A|1651
*
9PBE|1|S2|U|1673
9PBE|1|S2|G|1674
9PBE|1|S2|A|1675
9PBE|1|S2|U|1676
9PBE|1|S2|U|1677
9PBE|1|S2|A|1678
9PBE|1|S2|A|1679
9PBE|1|S2|G|1680

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

Small ribosomal subunit protein uS9

Chain Sc

40S ribosomal protein S28