J3_9PBE_042

3D structure

PDB id

9PBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9PBE|1|S2|U|1535, 9PBE|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PBE|1|S2|C|1532
9PBE|1|S2|A|1533
9PBE|1|S2|C|1534
9PBE|1|S2|U|1535
9PBE|1|S2|G|1536
*
9PBE|1|S2|C|1597
9PBE|1|S2|G|1598
9PBE|1|S2|U|1599
9PBE|1|S2|G|1600
9PBE|1|S2|A|1601
9PBE|1|S2|U|1602
9PBE|1|S2|G|1603
9PBE|1|S2|G|1604
*
9PBE|1|S2|C|1635
9PBE|1|S2|G|1636
9PBE|1|S2|A|1637
9PBE|1|S2|G|1638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

Small ribosomal subunit protein eS25