J3_9PGM_003
3D structure
- PDB id
- 9PGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of the human mitoribosome in the P-E state from TACO1-knockout cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9PGM|1|A|G|1918, 9PGM|1|A|G|2002, 9PGM|1|A|A|2003
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PGM_003 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.2548
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PGM|1|A|C|1915
9PGM|1|A|G|1916
9PGM|1|A|A|1917
9PGM|1|A|G|1918
9PGM|1|A|C|1919
9PGM|1|A|U|1920
9PGM|1|A|A|1921
*
9PGM|1|A|U|1983
9PGM|1|A|A|1984
9PGM|1|A|G|1985
*
9PGM|1|A|C|2001
9PGM|1|A|G|2002
9PGM|1|A|A|2003
9PGM|1|A|G|2004
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 2
- 39S ribosomal protein L34, mitochondrial
- Chain 9
- 39S ribosomal protein L41, mitochondrial
- Chain D
- 39S ribosomal protein L2, mitochondrial
Coloring options: