J3_9PIH_018

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PIH_018 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0477

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9PIH|1|a|G|30
9PIH|1|a|C|31
*
9PIH|1|a|G|474
9PIH|1|a|C|475
9PIH|1|a|G|476
9PIH|1|a|A|477
9PIH|1|a|A|478
9PIH|1|a|A|479
9PIH|1|a|A|480
9PIH|1|a|G|481
*
9PIH|1|a|C|509
9PIH|1|a|C|510

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain t

50S ribosomal protein L24