J3_9PIH_025

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9PIH|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PIH_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2116

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9PIH|1|a|C|1298
9PIH|1|a|G|1299
9PIH|1|a|G|1300
9PIH|1|a|A|1301
9PIH|1|a|A|1302
9PIH|1|a|G|1303
*
9PIH|1|a|C|1625
9PIH|1|a|A|1626
9PIH|1|a|G|1627
*
9PIH|1|a|C|1639
9PIH|1|a|A|1640
9PIH|1|a|A|1641
9PIH|1|a|G|1642

Current chains

Chain a

23S ribosomal RNA

Nearby chains