J3_9PIH_028

3D structure

PDB id

9PIH (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PIH_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1003

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9PIH|1|a|G|1424
9PIH|1|a|G|1425
9PIH|1|a|G|1426
9PIH|1|a|A|1427
9PIH|1|a|C|1428
9PIH|1|a|G|1429
*
9PIH|1|a|C|1564
9PIH|1|a|C|1565
*
9PIH|1|a|G|1568
9PIH|1|a|A|1569
9PIH|1|a|A|1570
9PIH|1|a|A|1571
9PIH|1|a|A|1572
9PIH|1|a|G|1573
9PIH|1|a|C|1574

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L2