J3_9PII_011

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9PII|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PII_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1764

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

9PII|1|A|C|990
9PII|1|A|U|991
9PII|1|A|U|992
9PII|1|A|G|993
9PII|1|A|A|994
9PII|1|A|C|995
9PII|1|A|A|996
9PII|1|A|U|997
*
9PII|1|A|A|1044
9PII|1|A|C|1045
9PII|1|A|A|1046
9PII|1|A|G|1047
*
9PII|1|A|C|1210
9PII|1|A|U|1211
9PII|1|A|U|1212
9PII|1|A|A|1213
9PII|1|A|C|1214
9PII|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14