J3_9PII_016
3D structure
- PDB id
- 9PII (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9PII|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PII_016 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1834
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9PII|1|A|U|1116
9PII|1|A|A|1117
9PII|1|A|U|1118
*
9PII|1|A|A|1155
9PII|1|A|G|1156
9PII|1|A|A|1157
9PII|1|A|C|1158
9PII|1|A|U|1159
9PII|1|A|G|1160
9PII|1|A|C|1161
*
9PII|1|A|G|1175
9PII|1|A|A|1176
9PII|1|A|G|1177
9PII|1|A|G|1178
9PII|1|A|A|1179
9PII|1|A|A|1180
9PII|1|A|G|1181
9PII|1|A|G|1182
9PII|1|A|U|1183
9PII|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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