J3_9PII_022

3D structure

PDB id

9PII (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9PII|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PII_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0409

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9PII|1|a|G|297
9PII|1|a|G|298
9PII|1|a|A|299
9PII|1|a|A|300
9PII|1|a|G|301
*
9PII|1|a|C|316
9PII|1|a|G|317
9PII|1|a|C|318
9PII|1|a|G|319
9PII|1|a|A|320
9PII|1|a|U|321
9PII|1|a|A|322
9PII|1|a|C|323
9PII|1|a|A|324
9PII|1|a|G|325
*
9PII|1|a|C|337
9PII|1|a|G|338
9PII|1|a|U|339
9PII|1|a|A|340
9PII|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

50S ribosomal protein L24