J3_9PIJ_023
3D structure
- PDB id
- 9PIJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 9PIJ|1|a|U|686, 9PIJ|1|a|A|792, 9PIJ|1|a|A|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PIJ_023 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1709
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9PIJ|1|a|U|683
9PIJ|1|a|G|684
9PIJ|1|a|A|685
9PIJ|1|a|U|686
9PIJ|1|a|C|687
9PIJ|1|a|U|688
9PIJ|1|a|A|689
*
9PIJ|1|a|U|773
9PIJ|1|a|G|774
9PIJ|1|a|G|775
*
9PIJ|1|a|C|791
9PIJ|1|a|A|792
9PIJ|1|a|A|793
9PIJ|1|a|A|794
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
- Chain c
- 50S ribosomal protein L2
Coloring options: