J3_9PJ7_027

3D structure

PDB id

9PJ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Doxycycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAGGUUG*CAUCCUUGAAAG*CAC

Length

23 nucleotides

Bulged bases

9PJ7|1|a|U|1144, 9PJ7|1|a|U|1161, 9PJ7|1|a|U|1165, 9PJ7|1|a|G|1166

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PJ7|1|a|G|1138
9PJ7|1|a|G|1139
9PJ7|1|a|A|1140
9PJ7|1|a|G|1141
9PJ7|1|a|G|1142
9PJ7|1|a|U|1143
9PJ7|1|a|U|1144
9PJ7|1|a|G|1145
*
9PJ7|1|a|C|1159
9PJ7|1|a|A|1160
9PJ7|1|a|U|1161
9PJ7|1|a|C|1162
9PJ7|1|a|C|1163
9PJ7|1|a|U|1164
9PJ7|1|a|U|1165
9PJ7|1|a|G|1166
9PJ7|1|a|A|1167
9PJ7|1|a|A|1168
9PJ7|1|a|A|1169
9PJ7|1|a|G|1170
*
9PJ7|1|a|C|1185
9PJ7|1|a|A|1186
9PJ7|1|a|C|1187

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L36

Chain l

50S ribosomal protein L16

Chain u

50S ribosomal protein L25