J3_9PJ8_030

3D structure

PDB id

9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Sarecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGGACG*UC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PJ8_030 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0961

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9PJ8|1|a|G|1604
9PJ8|1|a|G|1605
9PJ8|1|a|G|1606
9PJ8|1|a|A|1607
9PJ8|1|a|C|1608
9PJ8|1|a|G|1609
*
9PJ8|1|a|U|1747
9PJ8|1|a|C|1748
*
9PJ8|1|a|G|1751
9PJ8|1|a|A|1752
9PJ8|1|a|A|1753
9PJ8|1|a|A|1754
9PJ8|1|a|A|1755
9PJ8|1|a|G|1756
9PJ8|1|a|C|1757

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2