J3_9PJ8_032
3D structure
- PDB id
- 9PJ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Sarecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCC*GACUAGUGAUCU*ACUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9PJ8|1|a|A|2570, 9PJ8|1|a|U|2572, 9PJ8|1|a|A|2608
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ8_032 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1707
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9PJ8|1|a|G|2464
9PJ8|1|a|C|2465
9PJ8|1|a|C|2466
*
9PJ8|1|a|G|2566
9PJ8|1|a|A|2567
9PJ8|1|a|C|2568
9PJ8|1|a|U|2569
9PJ8|1|a|A|2570
9PJ8|1|a|G|2571
9PJ8|1|a|U|2572
9PJ8|1|a|G|2573
9PJ8|1|a|A|2574
9PJ8|1|a|U|2575
9PJ8|1|a|C|2576
9PJ8|1|a|U|2577
*
9PJ8|1|a|A|2603
9PJ8|1|a|C|2604
9PJ8|1|a|U|2605
9PJ8|1|a|C|2606
9PJ8|1|a|A|2607
9PJ8|1|a|A|2608
9PJ8|1|a|C|2609
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L33
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- 50S ribosomal protein L15
- Chain v
- 50S ribosomal protein L27
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