J3_9PJ9_024
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UGAAG*UACCGGAGUG*UGUAA
- Length
- 20 nucleotides
- Bulged bases
- 9PJ9|1|a|G|406
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_024 not in the Motif Atlas
- Geometric match to J3_8B0X_034
- Geometric discrepancy: 0.104
- The information below is about J3_8B0X_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_77124.1
- Basepair signature
- cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|U|382
9PJ9|1|a|G|383
9PJ9|1|a|A|384
9PJ9|1|a|A|385
9PJ9|1|a|G|386
*
9PJ9|1|a|U|401
9PJ9|1|a|A|402
9PJ9|1|a|C|403
9PJ9|1|a|C|404
9PJ9|1|a|G|405
9PJ9|1|a|G|406
9PJ9|1|a|A|407
9PJ9|1|a|G|408
9PJ9|1|a|U|409
9PJ9|1|a|G|410
*
9PJ9|1|a|U|422
9PJ9|1|a|G|423
9PJ9|1|a|U|424
9PJ9|1|a|A|425
9PJ9|1|a|A|426
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: