J3_9PJ9_026

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PJ9_026 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.0993

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9PJ9|1|a|C|783
9PJ9|1|a|A|784
9PJ9|1|a|G|785
*
9PJ9|1|a|C|817
9PJ9|1|a|G|818
9PJ9|1|a|A|819
9PJ9|1|a|A|820
9PJ9|1|a|C|821
*
9PJ9|1|a|G|845
9PJ9|1|a|A|846
9PJ9|1|a|U|847
9PJ9|1|a|G|848

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2