J3_9PJ9_028

3D structure

PDB id

9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

C. acnes 70S ribosome bound to Minocycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAUUA*UAG*CGAG

Length

13 nucleotides

Bulged bases

9PJ9|1|a|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9PJ9_028 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2278

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9PJ9|1|a|C|1374
9PJ9|1|a|G|1375
9PJ9|1|a|A|1376
9PJ9|1|a|U|1377
9PJ9|1|a|U|1378
9PJ9|1|a|A|1379
*
9PJ9|1|a|U|1809
9PJ9|1|a|A|1810
9PJ9|1|a|G|1811
*
9PJ9|1|a|C|1823
9PJ9|1|a|G|1824
9PJ9|1|a|A|1825
9PJ9|1|a|G|1826

Current chains

Chain a

23S rRNA

Nearby chains