J3_9PJ9_031
3D structure
- PDB id
- 9PJ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- C. acnes 70S ribosome bound to Minocycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GGGACG*UC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PJ9_031 not in the Motif Atlas
- Homologous match to J3_7A0S_019
- Geometric discrepancy: 0.0948
- The information below is about J3_7A0S_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
9PJ9|1|a|G|1604
9PJ9|1|a|G|1605
9PJ9|1|a|G|1606
9PJ9|1|a|A|1607
9PJ9|1|a|C|1608
9PJ9|1|a|G|1609
*
9PJ9|1|a|U|1747
9PJ9|1|a|C|1748
*
9PJ9|1|a|G|1751
9PJ9|1|a|A|1752
9PJ9|1|a|A|1753
9PJ9|1|a|A|1754
9PJ9|1|a|A|1755
9PJ9|1|a|G|1756
9PJ9|1|a|C|1757
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- 50S ribosomal protein L2
Coloring options: