J3_9PKB_009

3D structure

PDB id

9PKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKB|1|L5|C|1546
9PKB|1|L5|A|1547
9PKB|1|L5|G|1548
*
9PKB|1|L5|C|1580
9PKB|1|L5|G|1581
9PKB|1|L5|PSU|1582
9PKB|1|L5|A|1583
9PKB|1|L5|G|1584
*
9PKB|1|L5|U|1609
9PKB|1|L5|C|1610
9PKB|1|L5|C|1611
9PKB|1|L5|G|1612

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LR

60S ribosomal protein L19

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a