J3_9PKD_003
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9PKD|1|L5|U|354, 9PKD|1|L5|A|362, 9PKD|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|L5|C|351
9PKD|1|L5|G|352
9PKD|1|L5|A|353
9PKD|1|L5|U|354
9PKD|1|L5|A|355
9PKD|1|L5|G|356
9PKD|1|L5|U|357
9PKD|1|L5|C|358
9PKD|1|L5|A|359
9PKD|1|L5|A|360
9PKD|1|L5|C|361
9PKD|1|L5|A|362
9PKD|1|L5|A|363
9PKD|1|L5|G|364
9PKD|1|L5|U|365
9PKD|1|L5|A|366
9PKD|1|L5|C|367
*
9PKD|1|L5|G|374
9PKD|1|L5|G|375
9PKD|1|L5|A|376
9PKD|1|L5|A|377
9PKD|1|L5|A|378
9PKD|1|L5|G|379
*
9PKD|1|L8|C|21
9PKD|1|L8|U|22
9PKD|1|L8|C|23
9PKD|1|L8|G|24
Current chains
- Chain L5
- 28S rRNA
- Chain L8
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- 60S ribosomal protein L39
Coloring options: