J3_9PKD_031
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- U(OMG)G*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 9PKD|1|S2|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9PKD_031 not in the Motif Atlas
- Homologous match to J3_9PN5_031
- Geometric discrepancy: 0.1194
- The information below is about J3_9PN5_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.8
- Basepair signature
- cWW-F-cWW-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9PKD|1|S2|U|682
9PKD|1|S2|OMG|683
9PKD|1|S2|G|684
*
9PKD|1|S2|U|918
9PKD|1|S2|A|919
9PKD|1|S2|A|920
9PKD|1|S2|G|921
9PKD|1|S2|A|922
9PKD|1|S2|G|923
*
9PKD|1|S2|C|1019
9PKD|1|S2|A|1020
9PKD|1|S2|U|1021
9PKD|1|S2|U|1022
9PKD|1|S2|A|1023
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SH
- Small ribosomal subunit protein eS7
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sb
- Small ribosomal subunit protein eS27
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