J3_9PKD_033
3D structure
- PDB id
- 9PKD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ CHX and HHT treated 80S consensus ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 9PKD|1|S2|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9PKD|1|S2|A|938
9PKD|1|S2|U|939
9PKD|1|S2|U|940
9PKD|1|S2|C|941
*
9PKD|1|S2|G|985
9PKD|1|S2|G|986
9PKD|1|S2|A|987
9PKD|1|S2|C|988
9PKD|1|S2|C|989
9PKD|1|S2|A|990
9PKD|1|S2|G|991
9PKD|1|S2|A|992
9PKD|1|S2|G|993
*
9PKD|1|S2|C|1000
9PKD|1|S2|A|1001
9PKD|1|S2|U|1002
9PKD|1|S2|U|1003
9PKD|1|S2|PSU|1004
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain SB
- 40S ribosomal protein S3a
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SR
- Small ribosomal subunit protein eS17
- Chain Sa
- 40S ribosomal protein S26
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