J3_9PKG_005

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

9PKG|1|L5|C|704, 9PKG|1|L5|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|C|451
9PKG|1|L5|A|452
9PKG|1|L5|G|453
9PKG|1|L5|U|454
9PKG|1|L5|C|455
*
9PKG|1|L5|G|701
9PKG|1|L5|U|702
9PKG|1|L5|G|703
9PKG|1|L5|C|704
9PKG|1|L5|G|705
*
9PKG|1|L5|C|1292
9PKG|1|L5|G|1293
9PKG|1|L5|A|1294
9PKG|1|L5|C|1295
9PKG|1|L5|G|1296

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Le

60S ribosomal protein L32

Chain Lf

60S ribosomal protein L35a