J3_9PKG_006

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9PKG|1|L5|G|959, 9PKG|1|L5|C|967, 9PKG|1|L5|U|971, 9PKG|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|C|712
9PKG|1|L5|C|713
*
9PKG|1|L5|G|955
9PKG|1|L5|A|956
9PKG|1|L5|G|957
9PKG|1|L5|G|958
9PKG|1|L5|G|959
9PKG|1|L5|A|960
9PKG|1|L5|G|961
9PKG|1|L5|C|962
9PKG|1|L5|G|963
9PKG|1|L5|A|964
9PKG|1|L5|G|965
9PKG|1|L5|A|966
9PKG|1|L5|C|967
9PKG|1|L5|C|968
9PKG|1|L5|C|969
9PKG|1|L5|G|970
9PKG|1|L5|U|971
9PKG|1|L5|C|972
9PKG|1|L5|G|973
9PKG|1|L5|C|974
9PKG|1|L5|C|975
9PKG|1|L5|G|976
*
9PKG|1|L5|C|1278
9PKG|1|L5|A|1279
9PKG|1|L5|C|1280
9PKG|1|L5|G|1281
9PKG|1|L5|G|1282
9PKG|1|L5|G|1283
9PKG|1|L5|G|1284

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

Large ribosomal subunit protein eL6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32