J3_9PKG_023

3D structure

PDB id

9PKG (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UAUC*GU(PSU)*ACUAAUA

Length

14 nucleotides

Bulged bases

9PKG|1|L5|A|4464, 9PKG|1|L5|U|4465

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9PKG|1|L5|U|4463
9PKG|1|L5|A|4464
9PKG|1|L5|U|4465
9PKG|1|L5|C|4466
*
9PKG|1|L5|G|4491
9PKG|1|L5|U|4492
9PKG|1|L5|PSU|4493
*
9PKG|1|L5|A|4507
9PKG|1|L5|C|4508
9PKG|1|L5|U|4509
9PKG|1|L5|A|4510
9PKG|1|L5|A|4511
9PKG|1|L5|U|4512
9PKG|1|L5|A|4513

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23