J3_9PN5_005

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9PN5|1|A1|A|369
9PN5|1|A1|U|370
9PN5|1|A1|G|371
9PN5|1|A1|A|372
9PN5|1|A1|A|373
9PN5|1|A1|A|374
9PN5|1|A1|A|375
9PN5|1|A1|G|376
*
9PN5|1|A1|C|403
9PN5|1|A1|G|404
*
9PN5|1|A4|C|19
9PN5|1|A4|U|20

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain AC

60S ribosomal protein L4-A

Chain AP

60S ribosomal protein L17-A

Chain AY

60S ribosomal protein L26-A

Chain Al

60S ribosomal protein L39