J3_9PN5_007
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 9PN5|1|A1|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.2
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9PN5|1|A1|U|502
9PN5|1|A1|C|503
*
9PN5|1|A1|G|588
9PN5|1|A1|A|589
9PN5|1|A1|G|590
9PN5|1|A1|G|591
9PN5|1|A1|A|592
9PN5|1|A1|C|593
9PN5|1|A1|U|594
9PN5|1|A1|G|595
9PN5|1|A1|C|596
9PN5|1|A1|G|597
*
9PN5|1|A1|C|606
9PN5|1|A1|A|607
9PN5|1|A1|A|608
9PN5|1|A1|G|609
9PN5|1|A1|G|610
9PN5|1|A1|A|611
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4-A
- Chain AE
- Large ribosomal subunit protein eL6A
- Chain AF
- 60S ribosomal protein L7-A
- Chain Ae
- 60S ribosomal protein L32
Coloring options: