Motif J3_86133.3 Version J3_86133.3 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-3 | 11-14 | 12-13 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9AXU_008 | 9AXU | 0.0866 | 1 | 2 | LSU rRNA | U | 513 | C | 514 | * | G | 612 | A | 613 | G | 614 | G | 615 | A | 616 | C | 617 | U | 618 | G | 619 | C | 620 | G | 621 | * | C | 631 | A | 633 | G | 634 | G | 635 | A | 636 | cWW | cWW | cWS | cWW |
| 2 | J3_9PN5_007 | 9PN5 | 0.0703 | 1 | A1 | LSU rRNA | U | 502 | C | 503 | * | G | 588 | A | 589 | G | 590 | G | 591 | A | 592 | C | 593 | U | 594 | G | 595 | C | 596 | G | 597 | * | C | 606 | A | 608 | G | 609 | G | 610 | A | 611 | cWW | cWW | cWS | cWW |
| 3 | J3_8OI5_008 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | U | 497 | C | 498 | * | G | 586 | A | 587 | G | 588 | G | 589 | A | 590 | C | 591 | U | 592 | G | 593 | C | 594 | G | 595 | * | C | 604 | A | 606 | G | 607 | G | 608 | A | 609 | cWW | cWW | cWS | cWW |
| 4 | J3_9SUM_007 | 9SUM | 0.0952 | 1 | A | LSU rRNA | U | 451 | C | 452 | * | G | 538 | A | 539 | G | 540 | G | 541 | A | 542 | C | 543 | A | 544 | G | 545 | C | 546 | G | 547 | * | C | 552 | A | 554 | G | 555 | G | 556 | A | 557 | cWW | cWW | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UC*GAGGACUGCG*CAAGGA | 2 |
| UC*GAGGACUGCG*CUAGGA | 1 |
| UC*GAGGACAGCG*CUAGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AGGACUGC*AAGG | 2 |
| *AGGACUGC*UAGG | 1 |
| *AGGACAGC*UAGG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.07 | Max 0.13
Coloring options: