J3_9PN5_010

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

(PSU)U*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

9PN5|1|A1|A|1065, 9PN5|1|A1|A|1093, 9PN5|1|A1|U|1094, 9PN5|1|A1|U|1095

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_22278.1

Basepair signature

cWW-cWW-cHW-F-cSS-cWW

Number of instances in this motif group

3

Unit IDs

9PN5|1|A1|PSU|986
9PN5|1|A1|U|987
*
9PN5|1|A1|A|1062
9PN5|1|A1|G|1063
9PN5|1|A1|A|1064
9PN5|1|A1|A|1065
9PN5|1|A1|G|1066
*
9PN5|1|A1|C|1092
9PN5|1|A1|A|1093
9PN5|1|A1|U|1094
9PN5|1|A1|U|1095
9PN5|1|A1|U|1096
9PN5|1|A1|G|1097
9PN5|1|A1|A|1098

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L7-A

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29