Motif J3_22278.2 Version J3_22278.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-3 | 4-6 | 5-9 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9PN5_010 | 9PN5 | 0.2058 | 4 | A1 | LSU rRNA | PSU | 986 | U | 987 | * | A | 1062 | G | 1063 | A | 1064 | G | 1066 | * | C | 1092 | U | 1096 | G | 1097 | A | 1098 | cWW | cWW | csS | cHW | cWW |
| 2 | J3_9AXU_011 | 9AXU | 0.0000 | 4 | 2 | LSU rRNA | U | 1018 | U | 1019 | * | A | 1094 | G | 1095 | A | 1096 | G | 1098 | * | C | 1124 | C | 1128 | G | 1129 | A | 1130 | cWW | cWW | ncHW | cWW | |
| 3 | J3_8OI5_011 | 8OI5 | 0.6582 | 4 | 1 | LSU rRNA | U | 982 | U | 983 | * | A | 1058 | G | 1059 | A | 1060 | G | 1062 | * | C | 1088 | U | 1092 | G | 1093 | A | 1094 | cWW | cWW | csS | cHW | cWW |
| 4 | J3_9SUM_010 | 9SUM | 0.7729 | 4 | A | LSU rRNA | U | 933 | U | 934 | * | A | 1009 | G | 1010 | A | 1011 | G | 1013 | * | C | 1039 | C | 1043 | G | 1044 | A | 1045 | cWW | cWW | csS | cHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| PSUU*AGAAG*CAUUUGA | 1 |
| UU*AGACG*CCAUCGA | 1 |
| UU*AGAAG*CAAUUGA | 1 |
| UU*AGAAG*CAUACGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *GAA*AUUUG | 1 |
| *GAC*CAUCG | 1 |
| *GAA*AAUUG | 1 |
| *GAA*AUACG | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Heat map statistics
- Min 0.21 | Avg 0.44 | Max 0.78
Coloring options: