J3_9PN5_013
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9PN5|1|A1|U|1840, 9PN5|1|A1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.3
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9PN5|1|A1|G|1488
9PN5|1|A1|A|1489
9PN5|1|A1|A|1490
9PN5|1|A1|A|1491
*
9PN5|1|A1|U|1837
9PN5|1|A1|G|1838
9PN5|1|A1|A|1839
9PN5|1|A1|U|1840
9PN5|1|A1|A|1841
9PN5|1|A1|A|1842
9PN5|1|A1|C|1843
*
9PN5|1|A1|G|1852
9PN5|1|A1|U|1853
9PN5|1|A1|C|1854
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Al
- 60S ribosomal protein L39
Coloring options: