J3_9PN5_018
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- 9PN5|1|A1|U|2514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63968.1
- Basepair signature
- cWW-cWW-F-F-cWW-F-tWH-tHS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|A1|A|2432
9PN5|1|A1|U|2433
9PN5|1|A1|U|2434
9PN5|1|A1|G|2435
*
9PN5|1|A1|C|2512
9PN5|1|A1|U|2513
9PN5|1|A1|U|2514
9PN5|1|A1|A|2515
9PN5|1|A1|U|2516
9PN5|1|A1|U|2517
*
9PN5|1|A1|A|2590
9PN5|1|A1|A|2591
9PN5|1|A1|G|2592
9PN5|1|A1|A|2593
9PN5|1|A1|C|2594
9PN5|1|A1|A|2595
9PN5|1|A1|U|2596
9PN5|1|A1|U|2597
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- Large ribosomal subunit protein eL8A
- Chain AN
- Large ribosomal subunit protein eL15A
- Chain Ai
- 60S ribosomal protein L36-A
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