Motif J3_63968.2 Version J3_63968.2 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 1-17 | 2-16 | 3-15 | 4-5 | 6-13 | 7-12 | 8-11 | 9-10 | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_9PN5_018 | 9PN5 | 0.0897 | 1 | A1 | LSU rRNA | A | 2432 | U | 2433 | U | 2434 | G | 2435 | * | C | 2512 | U | 2513 | A | 2515 | U | 2516 | U | 2517 | * | A | 2590 | A | 2591 | G | 2592 | A | 2593 | C | 2594 | A | 2595 | U | 2596 | U | 2597 | cWW | cwW | tHH | cWW | tWH | tHS | cWW | |
| 2 | J3_8OI5_018 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | A | 2410 | U | 2411 | U | 2412 | G | 2413 | * | C | 2490 | U | 2491 | A | 2493 | U | 2494 | U | 2495 | * | A | 2562 | A | 2563 | G | 2564 | A | 2565 | C | 2566 | A | 2567 | U | 2568 | U | 2569 | cWW | ncwW | cWW | tWH | tHS | ntHS | cWW | |
| 3 | J3_9SUM_018 | 9SUM | 0.0858 | 1 | A | LSU rRNA | A | 2347 | U | 2348 | U | 2349 | G | 2350 | * | C | 2427 | U | 2428 | A | 2430 | C | 2431 | U | 2432 | * | A | 2490 | A | 2491 | G | 2492 | A | 2493 | C | 2494 | A | 2495 | U | 2496 | U | 2497 | cWW | cwW | cWW | tWH | tHS | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUG*CUUAUU*AAGACAUU | 2 |
| AUUG*CUUACU*AAGACAUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UUAU*AGACAU | 2 |
| UU*UUAC*AGACAU | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-cWW-F-F-cWW-F-tWH-tHS-F-F-cWW
- Heat map statistics
- Min 0.09 | Avg 0.06 | Max 0.10
Coloring options: