J3_9PN5_019
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 9PN5|1|A1|G|2549, 9PN5|1|A1|U|2550, 9PN5|1|A1|U|2551, 9PN5|1|A1|C|2552, 9PN5|1|A1|U|2553, 9PN5|1|A1|A|2554, 9PN5|1|A1|U|2558, 9PN5|1|A1|U|2559, 9PN5|1|A1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60469.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9PN5|1|A1|A|2529
9PN5|1|A1|G|2530
9PN5|1|A1|C|2531
9PN5|1|A1|U|2532
*
9PN5|1|A1|A|2547
9PN5|1|A1|C|2548
9PN5|1|A1|G|2549
9PN5|1|A1|U|2550
9PN5|1|A1|U|2551
9PN5|1|A1|C|2552
9PN5|1|A1|U|2553
9PN5|1|A1|A|2554
9PN5|1|A1|G|2555
9PN5|1|A1|C|2556
9PN5|1|A1|A|2557
9PN5|1|A1|U|2558
9PN5|1|A1|U|2559
9PN5|1|A1|C|2560
9PN5|1|A1|A|2561
9PN5|1|A1|A|2562
9PN5|1|A1|G|2563
*
9PN5|1|A1|U|2578
9PN5|1|A1|G|2579
9PN5|1|A1|A|2580
9PN5|1|A1|U|2581
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain AG
- Large ribosomal subunit protein eL8A
- Chain AX
- 60S ribosomal protein L25
- Chain AZ
- 60S ribosomal protein L27-A
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Ap
- 60S ribosomal protein L43-A
Coloring options: