Motif J3_60469.1 Version J3_60469.1 of this group appears in releases 4.10 to 4.10
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | break | 13 | 14 | 15 | 16 | 1-16 | 3-6 | 4-5 | 10-15 | 11-14 | 12-13 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8OI5_019 | 8OI5 | 0.0000 | 8 | 1 | LSU rRNA | A | 2507 | G | 2508 | C | 2509 | U | 2510 | * | A | 2525 | C | 2526 | G | 2533 | C | 2534 | A | 2535 | A | 2538 | A | 2539 | G | 2540 | * | C | 2550 | G | 2551 | A | 2552 | U | 2553 | cWW | cBW | cWW | tHH | tHS | cWW |
| 2 | J3_9PN5_019 | 9PN5 | 0.1403 | 9 | A1 | LSU rRNA | A | 2529 | G | 2530 | C | 2531 | U | 2532 | * | A | 2547 | C | 2548 | G | 2555 | C | 2556 | A | 2557 | A | 2561 | A | 2562 | G | 2563 | * | U | 2578 | G | 2579 | A | 2580 | U | 2581 | cWW | ncBW | cWW | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGCU*ACGUUCUAGCAUUAAG*CGAU | 1 |
| AGCU*ACGUUCUAGCAUUCAAG*UGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GC*CGUUCUAGCAUUAA*GA | 1 |
| GC*CGUUCUAGCAUUCAA*GA | 1 |
Release history
| Release | 4.10 |
|---|---|
| Date | 2026-05-20 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: