J3_9PN5_040

3D structure

PDB id

9PN5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite map of hypomethylated 80S ribosome treated with hygromycin B

Experimental method

ELECTRON MICROSCOPY

Resolution

1.75 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.6

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9PN5|1|B5|U|1293
9PN5|1|B5|G|1294
*
9PN5|1|B5|U|1303
9PN5|1|B5|G|1304
9PN5|1|B5|U|1305
9PN5|1|B5|C|1306
*
9PN5|1|B5|G|1318
9PN5|1|B5|A|1319
9PN5|1|B5|U|1320
9PN5|1|B5|A|1321
9PN5|1|B5|A|1322

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

Small ribosomal subunit protein uS2A

Chain BC

Small ribosomal subunit protein uS5

Chain BR

Small ribosomal subunit protein eS17A