J3_9PN5_041
3D structure
- PDB id
- 9PN5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Composite map of hypomethylated 80S ribosome treated with hygromycin B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.75 Å
Loop
- Sequence
- AAC*GGAC*GUU(PSU)
- Length
- 11 nucleotides
- Bulged bases
- 9PN5|1|B5|U|1413, 9PN5|1|B5|U|1414
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.7
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9PN5|1|B5|A|1336
9PN5|1|B5|A|1337
9PN5|1|B5|C|1338
*
9PN5|1|B5|G|1386
9PN5|1|B5|G|1387
9PN5|1|B5|A|1388
9PN5|1|B5|C|1389
*
9PN5|1|B5|G|1412
9PN5|1|B5|U|1413
9PN5|1|B5|U|1414
9PN5|1|B5|PSU|1415
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Small ribosomal subunit protein uS7
- Chain BQ
- Small ribosomal subunit protein uS9A
- Chain BR
- Small ribosomal subunit protein eS17A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain Bg
- Small ribosomal subunit protein RACK1
Coloring options: