J3_9Q1Q_002
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 9Q1Q|1|5|U|354, 9Q1Q|1|5|A|362, 9Q1Q|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1Q|1|5|C|351
9Q1Q|1|5|G|352
9Q1Q|1|5|A|353
9Q1Q|1|5|U|354
9Q1Q|1|5|A|355
9Q1Q|1|5|G|356
9Q1Q|1|5|U|357
9Q1Q|1|5|C|358
9Q1Q|1|5|A|359
9Q1Q|1|5|A|360
9Q1Q|1|5|C|361
9Q1Q|1|5|A|362
9Q1Q|1|5|A|363
9Q1Q|1|5|G|364
9Q1Q|1|5|U|365
9Q1Q|1|5|A|366
9Q1Q|1|5|C|367
*
9Q1Q|1|5|G|374
9Q1Q|1|5|G|375
9Q1Q|1|5|A|376
9Q1Q|1|5|A|377
9Q1Q|1|5|A|378
9Q1Q|1|5|G|379
*
9Q1Q|1|8|C|21
9Q1Q|1|8|U|22
9Q1Q|1|8|C|23
9Q1Q|1|8|G|24
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L26
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
Coloring options: