J3_9Q1Q_003
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_003 not in the Motif Atlas
- Geometric match to J3_8GLP_025
- Geometric discrepancy: 0.0777
- The information below is about J3_8GLP_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68715.4
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 12
Unit IDs
9Q1Q|1|5|U|380
9Q1Q|1|5|U|381
9Q1Q|1|5|G|382
9Q1Q|1|5|A|383
9Q1Q|1|5|A|384
9Q1Q|1|5|A|385
9Q1Q|1|5|A|386
9Q1Q|1|5|G|387
*
9Q1Q|1|5|C|414
9Q1Q|1|5|G|415
*
9Q1Q|1|8|C|19
9Q1Q|1|8|A|20
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L26
- Chain l
- 60S ribosomal protein L39
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