J3_9Q1Q_011
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|2396
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_011 not in the Motif Atlas
- Homologous match to J3_9AXU_013
- Geometric discrepancy: 0.1256
- The information below is about J3_9AXU_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.3
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9Q1Q|1|5|C|2393
9Q1Q|1|5|G|2394
9Q1Q|1|5|A|2395
9Q1Q|1|5|A|2396
9Q1Q|1|5|G|2397
9Q1Q|1|5|U|2398
9Q1Q|1|5|G|2399
*
9Q1Q|1|5|C|2805
9Q1Q|1|5|A|2806
9Q1Q|1|5|A|2807
*
9Q1Q|1|5|U|2819
9Q1Q|1|5|C|2820
9Q1Q|1|5|U|2821
9Q1Q|1|5|G|2822
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
Coloring options: