J3_9Q1Q_015

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

9Q1Q|1|5|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|5|A|2551
9Q1Q|1|5|G|2552
9Q1Q|1|5|A|2553
9Q1Q|1|5|U|2554
9Q1Q|1|5|G|2555
*
9Q1Q|1|5|C|2572
9Q1Q|1|5|A|2573
9Q1Q|1|5|G|2574
9Q1Q|1|5|U|2575
*
9Q1Q|1|5|A|2757
9Q1Q|1|5|G|2758
9Q1Q|1|5|G|2759
9Q1Q|1|5|G|2760
9Q1Q|1|5|U|2761
9Q1Q|1|5|G|2762
9Q1Q|1|5|U|2763
9Q1Q|1|5|A|2764
9Q1Q|1|5|A|2765
9Q1Q|1|5|A|2766
9Q1Q|1|5|U|2767

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27