J3_9Q1Q_018
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 9Q1Q|1|5|G|4076
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_018 not in the Motif Atlas
- Homologous match to J3_8GLP_007
- Geometric discrepancy: 0.1524
- The information below is about J3_8GLP_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17460.1
- Basepair signature
- cWW-tHH-cWW-F-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9Q1Q|1|5|C|3937
9Q1Q|1|5|G|3938
9Q1Q|1|5|G|3939
*
9Q1Q|1|5|C|4074
9Q1Q|1|5|U|4075
9Q1Q|1|5|G|4076
9Q1Q|1|5|A|4077
9Q1Q|1|5|C|4078
*
9Q1Q|1|5|G|4168
9Q1Q|1|5|G|4169
9Q1Q|1|5|A|4170
9Q1Q|1|5|C|4171
9Q1Q|1|5|A|4172
9Q1Q|1|5|G|4173
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain G
- Large ribosomal subunit protein eL8
- Chain N
- 60S ribosomal protein L15
- Chain i
- 60S ribosomal protein L36
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