J3_9Q1Q_021
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 9Q1Q|1|5|A|4280, 9Q1Q|1|5|A|4282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_021 not in the Motif Atlas
- Homologous match to J3_9AXU_022
- Geometric discrepancy: 0.11
- The information below is about J3_9AXU_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.4
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
9Q1Q|1|5|C|4241
9Q1Q|1|5|U|4242
9Q1Q|1|5|C|4243
*
9Q1Q|1|5|G|4267
9Q1Q|1|5|A|4268
9Q1Q|1|5|G|4269
*
9Q1Q|1|5|C|4278
9Q1Q|1|5|A|4279
9Q1Q|1|5|A|4280
9Q1Q|1|5|A|4281
9Q1Q|1|5|A|4282
9Q1Q|1|5|G|4283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11
- Chain T
- 60S ribosomal protein L21
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