J3_9Q1Q_025
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 9Q1Q|1|7|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_025 not in the Motif Atlas
- Geometric match to J3_9AXU_026
- Geometric discrepancy: 0.096
- The information below is about J3_9AXU_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.3
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|7|C|9
9Q1Q|1|7|C|10
9Q1Q|1|7|A|11
9Q1Q|1|7|U|12
9Q1Q|1|7|A|13
9Q1Q|1|7|C|14
*
9Q1Q|1|7|G|65
9Q1Q|1|7|G|66
*
9Q1Q|1|7|U|109
9Q1Q|1|7|G|110
Current chains
- Chain 7
- 5S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 60S ribosomal protein L5
- Chain I
- Ribosomal protein L10
- Chain T
- 60S ribosomal protein L21
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