J3_9Q1Q_034

3D structure

PDB id

9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (A site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1Q|1|9|C|1218
9Q1Q|1|9|C|1219
9Q1Q|1|9|A|1220
9Q1Q|1|9|G|1221
*
9Q1Q|1|9|C|1645
9Q1Q|1|9|C|1646
9Q1Q|1|9|A|1647
9Q1Q|1|9|G|1648
9Q1Q|1|9|U|1649
9Q1Q|1|9|A|1650
9Q1Q|1|9|A|1651
*
9Q1Q|1|9|U|1673
9Q1Q|1|9|G|1674
9Q1Q|1|9|A|1675
9Q1Q|1|9|U|1676
9Q1Q|1|9|U|1677
9Q1Q|1|9|A|1678
9Q1Q|1|9|A|1679
9Q1Q|1|9|G|1680

Current chains

Chain 9

18S RNA (1696-MER)

Nearby chains

Chain FF

Small ribosomal subunit protein uS7

Chain QQ

Small ribosomal subunit protein uS9

Chain cc

40S ribosomal protein S28