J3_9Q1Q_041
3D structure
- PDB id
- 9Q1Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (A site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 9Q1Q|1|9|U|1535, 9Q1Q|1|9|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1Q_041 not in the Motif Atlas
- Homologous match to J3_9PN5_043
- Geometric discrepancy: 0.2181
- The information below is about J3_9PN5_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.4
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1Q|1|9|C|1532
9Q1Q|1|9|A|1533
9Q1Q|1|9|C|1534
9Q1Q|1|9|U|1535
9Q1Q|1|9|G|1536
*
9Q1Q|1|9|C|1597
9Q1Q|1|9|G|1598
9Q1Q|1|9|U|1599
9Q1Q|1|9|G|1600
9Q1Q|1|9|A|1601
9Q1Q|1|9|U|1602
9Q1Q|1|9|G|1603
9Q1Q|1|9|G|1604
*
9Q1Q|1|9|C|1635
9Q1Q|1|9|G|1636
9Q1Q|1|9|A|1637
9Q1Q|1|9|G|1638
Current chains
- Chain 9
- 18S RNA (1696-MER)
Nearby chains
- Chain FF
- Small ribosomal subunit protein uS7
- Chain SS
- 40S ribosomal protein S18
- Chain TT
- Small ribosomal subunit protein eS19
- Chain ZZ
- 40S ribosomal protein S25
Coloring options: