J3_9Q1S_001

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

9Q1S|1|5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|5|C|112
9Q1S|1|5|A|113
9Q1S|1|5|G|114
9Q1S|1|5|C|115
9Q1S|1|5|G|116
*
9Q1S|1|5|C|155
9Q1S|1|5|G|156
9Q1S|1|5|U|157
9Q1S|1|5|A|158
9Q1S|1|5|C|159
9Q1S|1|5|G|160
*
9Q1S|1|5|C|275
9Q1S|1|5|C|276
9Q1S|1|5|G|277
9Q1S|1|5|G|278

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein eL8

Chain L

Large ribosomal subunit protein eL13

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35

Chain i

60S ribosomal protein L36