J3_9Q1S_012
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9Q1S|1|5|U|2788, 9Q1S|1|5|A|2789, 9Q1S|1|5|U|2790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9Q1S_012 not in the Motif Atlas
- Homologous match to J3_9H3G_016
- Geometric discrepancy: 0.144
- The information below is about J3_9H3G_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9Q1S|1|5|G|2402
9Q1S|1|5|A|2403
9Q1S|1|5|A|2404
9Q1S|1|5|G|2405
*
9Q1S|1|5|C|2785
9Q1S|1|5|C|2786
9Q1S|1|5|A|2787
9Q1S|1|5|U|2788
9Q1S|1|5|A|2789
9Q1S|1|5|U|2790
9Q1S|1|5|C|2791
*
9Q1S|1|5|G|2800
9Q1S|1|5|U|2801
9Q1S|1|5|C|2802
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain g
- 60S ribosomal protein L34
- Chain j
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L39
Coloring options: