J3_9Q1S_014
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CAGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 9Q1S|1|5|C|2470, 9Q1S|1|5|A|2472, 9Q1S|1|5|G|2475
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|5|A|2451
9Q1S|1|5|G|2452
9Q1S|1|5|A|2453
9Q1S|1|5|U|2454
9Q1S|1|5|G|2455
9Q1S|1|5|G|2456
*
9Q1S|1|5|C|2465
9Q1S|1|5|G|2466
9Q1S|1|5|U|2467
9Q1S|1|5|U|2468
9Q1S|1|5|C|2469
9Q1S|1|5|C|2470
9Q1S|1|5|G|2471
9Q1S|1|5|A|2472
9Q1S|1|5|A|2473
9Q1S|1|5|G|2474
9Q1S|1|5|G|2475
9Q1S|1|5|G|2476
*
9Q1S|1|5|C|2501
9Q1S|1|5|A|2502
9Q1S|1|5|G|2503
9Q1S|1|5|C|2504
9Q1S|1|5|C|2505
9Q1S|1|5|G|2506
9Q1S|1|5|A|2507
9Q1S|1|5|U|2508
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S ribosomal protein L8
- Chain G
- Large ribosomal subunit protein eL8
- Chain N
- 60S ribosomal protein L15
- Chain X
- Large ribosomal subunit protein uL23
- Chain j
- 60S ribosomal protein L37
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