J3_9Q1S_030

3D structure

PDB id

9Q1S (explore in PDB, NAKB, or RNA 3D Hub)

Description

NediV IRES (P site) in complex with Rabbit 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAUUU

Length

18 nucleotides

Bulged bases

9Q1S|1|9|G|991

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Q1S|1|9|A|938
9Q1S|1|9|U|939
9Q1S|1|9|U|940
9Q1S|1|9|C|941
*
9Q1S|1|9|G|985
9Q1S|1|9|G|986
9Q1S|1|9|A|987
9Q1S|1|9|C|988
9Q1S|1|9|C|989
9Q1S|1|9|A|990
9Q1S|1|9|G|991
9Q1S|1|9|A|992
9Q1S|1|9|G|993
*
9Q1S|1|9|C|1000
9Q1S|1|9|A|1001
9Q1S|1|9|U|1002
9Q1S|1|9|U|1003
9Q1S|1|9|U|1004

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain NN

40S ribosomal protein S13

Chain OO

Small ribosomal subunit protein uS11

Chain aa

eS26

Chain p

60S ribosomal protein L37a