J3_9Q1S_036
3D structure
- PDB id
- 9Q1S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NediV IRES (P site) in complex with Rabbit 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Q1S|1|9|U|1340
9Q1S|1|9|C|1341
9Q1S|1|9|U|1342
9Q1S|1|9|U|1343
9Q1S|1|9|A|1344
9Q1S|1|9|G|1345
*
9Q1S|1|9|C|1384
9Q1S|1|9|G|1385
9Q1S|1|9|A|1386
9Q1S|1|9|G|1387
9Q1S|1|9|A|1388
9Q1S|1|9|C|1389
*
9Q1S|1|9|G|1481
9Q1S|1|9|C|1482
9Q1S|1|9|A|1483
9Q1S|1|9|A|1484
9Q1S|1|9|U|1485
9Q1S|1|9|A|1486
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- Small ribosomal subunit protein uS3
- Chain QQ
- Small ribosomal subunit protein uS9
- Chain RR
- 40S ribosomal protein S17
- Chain UU
- uS10
- Chain dd
- 40S ribosomal protein S29
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